Difference between revisions of "Bamtools"
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Moskalenko (talk | contribs) m (Text replace - "{{#if: {{#var: mod}}|==Execution Environment and Modules== {{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}" to "==Required Modules== modules documentation ===Serial=== *{{#var:app}}") |
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===Serial=== | ===Serial=== | ||
*{{#var:app}} | *{{#var:app}} | ||
| − | + | ==System Variables== | |
| − | * | + | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory |
==Additional tools== | ==Additional tools== | ||
We also provide small tools that depend on bamtools or are built against it within this module. | We also provide small tools that depend on bamtools or are built against it within this module. | ||
* [https://github.com/ekg/bamaddrg bamaddrg] (2012-01-27 build against bamtools 0.9.4). | * [https://github.com/ekg/bamaddrg bamaddrg] (2012-01-27 build against bamtools 0.9.4). | ||
| − | {{#if: {{#var: exe}}|== | + | <!--Additional--> |
| + | {{#if: {{#var: exe}}|==Additional Information== | ||
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 17:28, 10 August 2012
Description
BamTools is a project that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating BAM (genome alignment) files.
Required Modules
Serial
- bamtools
System Variables
- HPC_{{#uppercase:bamtools}}_DIR - installation directory
Additional tools
We also provide small tools that depend on bamtools or are built against it within this module.
- bamaddrg (2012-01-27 build against bamtools 0.9.4).