ABySS: Difference between revisions
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*openmpi | *openmpi | ||
* {{#var:app}} | * {{#var:app}} | ||
==System Variables== | |||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | |||
{{#if: {{#var: exe}}|==How To Run== | {{#if: {{#var: exe}}|==How To Run== | ||
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | ||
Revision as of 17:24, 10 August 2012
Description
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.
Required Modules
Serial
- abyss
Parallel (MPI)
- intel
- openmpi
- abyss
System Variables
- HPC_{{#uppercase:abyss}}_DIR - installation directory