Difference between revisions of "Newbler"
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Moskalenko (talk | contribs) m (Text replace - "<!--Location--> {{App_Location|app={{#var:app}}|{{#var:ver}}}}" to "") |
Moskalenko (talk | contribs) m (Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==") |
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{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}} | {{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}} | ||
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Revision as of 02:03, 10 August 2012
Description
Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life Sciences, a Roche Diagnostics company.
Available versions
- 2.6
Execution Environment and Modules
To use newbler with the environment modules system at HPC the following commands are available:
Get module information for newbler:
$module spider newbler
Load the default application module:
$module load newbler
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_NEWBLER_DIR - directory where newbler is located.
- HPC_NEWBLER_BIN - executable directory