Difference between revisions of "Bamtools"
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BamTools is a project that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating BAM (genome alignment) files. | BamTools is a project that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating BAM (genome alignment) files. | ||
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==Available versions== | ==Available versions== | ||
* 2.1.0 | * 2.1.0 | ||
Revision as of 01:59, 10 August 2012
Description
BamTools is a project that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating BAM (genome alignment) files.
Available versions
- 2.1.0
Running the application using modules
To use bamtools with the environment modules system at HPC the following commands are available:
Get module information for bamtools:
$module spider bamtools
Load the default application module:
$module load bamtools
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BAMTOOLS_DIR - directory where bamtools is located.
- HPC_BAMTOOLS_BIN - executable directory
- HPC_BAMTOOLS_INC - includes directory
Additional tools
We also provide small tools that depend on bamtools or are built against it within this module.
- bamaddrg (2012-01-27 build against bamtools 0.9.4).