Difference between revisions of "Vigor4"
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Vigor4 uses the VIGOR_DB project which currently has databases for the following viruses: | Vigor4 uses the VIGOR_DB project which currently has databases for the following viruses: | ||
| − | Influenza (A & B for human, avian, and swine, and C for human) | + | * Influenza (A & B for human, avian, and swine, and C for human) |
* SARS-CoV-2 | * SARS-CoV-2 | ||
* West Nile Virus | * West Nile Virus | ||
Revision as of 19:46, 4 September 2024
Description
VIGOR4 (Viral Genome ORF Reader) is a Java application to predict protein sequences encoded in viral genomes. VIGOR4 determines the protein coding sequences by sequence similarity searching against curated viral protein databases.
This project is funded by the National Institute Of Allergy And Infectious Diseases of the National Institutes of Health under Award Number U19AI110819 and Contract Number HHSN272201400028C and is a collaboration between Northrop Grumman Health IT, J. Craig Venter Institute, and Vecna Technologies.
Annotatable Viruses
Vigor4 uses the VIGOR_DB project which currently has databases for the following viruses:
- Influenza (A & B for human, avian, and swine, and C for human)
- SARS-CoV-2
- West Nile Virus
- Zika Virus
- Chikungunya Virus
- Eastern Equine Encephalitis Virus
- Respiratory Syncytial Virus
- Rotavirus
- Enterovirus
- Lassa Mammarenavirus
Environment Modules
Run module spider vigor4 to find out what environment modules are available for this application.
System Variables
- HPC_VIGOR4_DIR - installation directory
- HPC_VIGOR4_BIN - executable directory