Braker: Difference between revisions
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{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
Prior to running braker, you will need to copy the AUGUSTUS_CONFIG_PATH to your working directory: | |||
$ cd /path/to/blue/working/directory | |||
$ module load braker | |||
$ cp -r $AUGUSTUS_CONFIG_PATH . | |||
After loading the module in your job script, you will need to export the path to the config directory: | |||
export AUGUSTUS_CONFIG_PATH=/path/to/blue/working/directory/config | |||
|}} | |}} | ||
Revision as of 18:49, 19 August 2024
Description
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
Environment Modules
Run module spider braker to find out what environment modules are available for this application.
System Variables
- HPC_BRAKER_DIR - installation directory
- HPC_BRAKER_BIN - executable directory
Additional Information
Prior to running braker, you will need to copy the AUGUSTUS_CONFIG_PATH to your working directory:
$ cd /path/to/blue/working/directory
$ module load braker
$ cp -r $AUGUSTUS_CONFIG_PATH .
After loading the module in your job script, you will need to export the path to the config directory:
export AUGUSTUS_CONFIG_PATH=/path/to/blue/working/directory/config
Citation
If you publish research that uses braker you have to cite it as follows:
https://github.com/Gaius-Augustus/BRAKER#citing-braker-and-software-called-by-braker