NetCDF: Difference between revisions
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__NOTOC__ | __NOTOC__ | ||
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[[Category:Software]] | [[Category:Software]][[Category:Data Science]] | ||
{|<!--Main settings - REQUIRED--> | {|<!--Main settings - REQUIRED--> | ||
|{{#vardefine:app| | |{{#vardefine:app|netcdf}} | ||
|{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}} | |{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}} | ||
|{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | |{{#vardefine:exe|1}} <!--Present manual instructions for running the software --> | ||
|{{#vardefine:conf| | |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | ||
|{{#vardefine:pbs|}} <!--Enable PBS script wiki page link--> | |{{#vardefine:pbs|}} <!--Enable PBS script wiki page link--> | ||
|{{#vardefine:policy|}} <!--Enable policy section --> | |{{#vardefine:policy|}} <!--Enable policy section --> | ||
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:Starting with version 4.4.3 the upstream project split C and Fortran NetCDF libraries, which will take different developmental paths. We are following the upstream, so we have netcdf-c and netcdf-f environment modules for 4.4.3 and later NetCDF libraries. Please load the appropriate module. Note that the Fortran module man not have all supporting binaries that netcdf-c module has. | :Starting with version 4.4.3 the upstream project split C and Fortran NetCDF libraries, which will take different developmental paths. We are following the upstream, so we have netcdf-c and netcdf-f environment modules for 4.4.3 and later NetCDF libraries. Please load the appropriate module. Note that the Fortran module man not have all supporting binaries that netcdf-c module has. | ||
<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
==System Variables== | ==System Variables== | ||
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* HPC_NETCDF_LIB - library directory | * HPC_NETCDF_LIB - library directory | ||
* HPC_NETCDF_INC - include directory | * HPC_NETCDF_INC - include directory | ||
{{#if: {{#var: exe}}|== | |||
{{#if: {{#var: exe}}|==Additional Information== | |||
To use the NETCDF library, compile the source code with the option: | |||
*-I$HPC_NETCDF_INC | |||
and add the following options to the link step: | |||
*-L$HPC_NETCDF_LIB -lnetcdf|}} | |||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
See the [[{{PAGENAME}}_4.2]] page for {{#var: app}} configuration details.|}} | See the [[{{PAGENAME}}_4.2]] page for {{#var: app}} configuration details.|}} | ||
Latest revision as of 14:56, 12 March 2024
Description
NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
- Note
- Starting with version 4.4.3 the upstream project split C and Fortran NetCDF libraries, which will take different developmental paths. We are following the upstream, so we have netcdf-c and netcdf-f environment modules for 4.4.3 and later NetCDF libraries. Please load the appropriate module. Note that the Fortran module man not have all supporting binaries that netcdf-c module has.
Environment Modules
Run module spider netcdf to find out what environment modules are available for this application.
System Variables
- HPC_NETCDF_DIR - installation directory
- HPC_NETCDF_BIN - executable binary directory
- HPC_NETCDF_LIB - library directory
- HPC_NETCDF_INC - include directory
Additional Information
To use the NETCDF library, compile the source code with the option:
- -I$HPC_NETCDF_INC
and add the following options to the link step:
- -L$HPC_NETCDF_LIB -lnetcdf
Citation
If you publish research that uses netcdf, you may cite it as follows:
Rew, R. K. and G. P. Davis, "NetCDF: An Interface for Scientific Data Access," IEEE Computer Graphics and Applications, Vol. 10, No. 4, pp. 76-82, July 1990.
Brown, S. A, M. Folk, G. Goucher, and R. Rew, "Software for Portable Scientific Data Management," Computers in Physics, American Institute of Physics, Vol. 7, No. 3, May/June 1993, pp. 304-308.