Difference between revisions of "Qsiprep"
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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|qsiprep}} |{{#vardefine:url|https://github.com/PennLINC/qsiprep}} <!--CONFIGURATION: OPTIONAL (|1}} me...") |
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
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qsiprep configures pipelines for processing diffusion-weighted MRI (dMRI) data. The main features of this software are: | qsiprep configures pipelines for processing diffusion-weighted MRI (dMRI) data. The main features of this software are: | ||
1. A BIDS-app approach to preprocessing nearly all kinds of modern diffusion MRI data. | 1. A BIDS-app approach to preprocessing nearly all kinds of modern diffusion MRI data. | ||
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2. Automatically generated preprocessing pipelines that correctly group, distortion correct, motion correct, denoise, coregister and resample your scans, producing visual reports and QC metrics. | 2. Automatically generated preprocessing pipelines that correctly group, distortion correct, motion correct, denoise, coregister and resample your scans, producing visual reports and QC metrics. | ||
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3. A system for running state-of-the-art reconstruction pipelines that include algorithms from Dipy, MRTrix, DSI Studio and others. | 3. A system for running state-of-the-art reconstruction pipelines that include algorithms from Dipy, MRTrix, DSI Studio and others. | ||
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4. A novel motion correction algorithm that works on DSI and random q-space sampling schemes | 4. A novel motion correction algorithm that works on DSI and random q-space sampling schemes | ||
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | * HPC_FREESURFER_LIC - FreeSurfer license directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 16:13, 17 October 2023
Description
qsiprep configures pipelines for processing diffusion-weighted MRI (dMRI) data. The main features of this software are:
1. A BIDS-app approach to preprocessing nearly all kinds of modern diffusion MRI data.
2. Automatically generated preprocessing pipelines that correctly group, distortion correct, motion correct, denoise, coregister and resample your scans, producing visual reports and QC metrics.
3. A system for running state-of-the-art reconstruction pipelines that include algorithms from Dipy, MRTrix, DSI Studio and others.
4. A novel motion correction algorithm that works on DSI and random q-space sampling schemes
Environment Modules
Run module spider qsiprep to find out what environment modules are available for this application.
System Variables
- HPC_QSIPREP_DIR - installation directory
- HPC_QSIPREP_BIN - executable directory
- HPC_FREESURFER_LIC - FreeSurfer license directory