Difference between revisions of "MRIcron"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:Imaging {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|mricron}} |{{#vardefine:url|http://www.mccauslandcenter...") |
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Imaging]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|mricron}} | |{{#vardefine:app|mricron}} | ||
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | Chris Rorden's MRIcron. This modules provides the full MRIcron package although it was primarily installed to provide dcm2nii for the nipype, which attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. NIfTI is a modern incarnation of the Analyze format, but includes important information like the orientation of the image. DCM2NII is a stand-alone program that is distributed with MRIcron. GUI tools from this package can only be run on the gui. | + | Chris Rorden's MRIcron. This modules provides the full MRIcron package although it was primarily installed to provide dcm2nii for the nipype, which attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. NIfTI is a modern incarnation of the Analyze format, but includes important information like the orientation of the image. DCM2NII is a stand-alone program that is distributed with MRIcron. GUI tools from this package can only be run on the gui.rc.ufl.edu machine as described in [[GUI_Programs]]. |
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 20:33, 24 August 2022
Description
Chris Rorden's MRIcron. This modules provides the full MRIcron package although it was primarily installed to provide dcm2nii for the nipype, which attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. NIfTI is a modern incarnation of the Analyze format, but includes important information like the orientation of the image. DCM2NII is a stand-alone program that is distributed with MRIcron. GUI tools from this package can only be run on the gui.rc.ufl.edu machine as described in GUI_Programs.
Environment Modules
Run module spider mricron to find out what environment modules are available for this application.
System Variables
- HPC_MRICRON_DIR - installation directory