Difference between revisions of "Varnorm"
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| − | [[Category:Software]][[Category:Biology | + | [[Category:Software]][[Category:Biology]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|varnorm}} | |{{#vardefine:app|varnorm}} | ||
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<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 17:23, 22 August 2022
Description
Normalize variants in VCF file using left-aligned normalization. Basically a wrapper around Counsyl's hgvs package.
Environment Modules
Run module spider varnorm to find out what environment modules are available for this application.
System Variables
- HPC_VARNORM_DIR - installation directory
- HPC_VARNORM_BIN - executable directory