Difference between revisions of "STAR"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsNGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|star}} |{{#vardefine:url|https://code.google.com/p/rna-star/}} <!--C...") |
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |
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|{{#vardefine:pbs|}} <!--PBS SCRIPTS--> | |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> | ||
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A. Dobin et al, Bioinformatics 2012; doi: 10.1093/bioinformatics/bts635 "STAR: ultrafast universal RNA-seq aligner" | A. Dobin et al, Bioinformatics 2012; doi: 10.1093/bioinformatics/bts635 "STAR: ultrafast universal RNA-seq aligner" | ||
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
| − | + | Make sure to set a directory for temporary files within your /blue working directory with the '<code>--outTempDir</code> argument to avoid job crashes and filling up diskless compute nodes. See [[Temporary Directories]] for more information. | |
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Latest revision as of 16:01, 22 August 2022
Description
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.
For details, please see the paper:
A. Dobin et al, Bioinformatics 2012; doi: 10.1093/bioinformatics/bts635 "STAR: ultrafast universal RNA-seq aligner"
Environment Modules
Run module spider star to find out what environment modules are available for this application.
System Variables
- HPC_STAR_DIR - installation directory
Additional Information
Make sure to set a directory for temporary files within your /blue working directory with the '--outTempDir argument to avoid job crashes and filling up diskless compute nodes. See Temporary Directories for more information.