Difference between revisions of "Scalpel"
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(Created page with "Category:SoftwareCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|scalpel}} |{{#vardefine:url|https://sourceforge.net/projects/scalpel/}} <!--CONFIG...") |
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| − | [[Category:Software]][[Category:Biology]] | + | [[Category:Software]][[Category:Biology]][[Category:NGS]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|scalpel}} | |{{#vardefine:app|scalpel}} | ||
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<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 22:07, 21 August 2022
Description
Bioinformatics pipeline for discovery of genetic variants from NGS reads.
Environment Modules
Run module spider scalpel to find out what environment modules are available for this application.
System Variables
- HPC_SCALPEL_DIR - installation directory