Prokka: Difference between revisions
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[[Category:Software]] | [[Category:Software]][[Category:Biology]][[Category:Assembly]][[Category:Genomics]] | ||
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== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
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Latest revision as of 19:41, 21 August 2022
Description
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.
Environment Modules
Run module spider prokka to find out what environment modules are available for this application.
System Variables
- HPC_PROKKA_DIR - installation directory
Citation
If you publish research that uses prokka you have to cite it as follows:
Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014 Jul 15;30(14):2068-9. PMID:24642063