Difference between revisions of "Pomoxis"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BiologyCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|pomoxis}} |{{#vardefine:url|https://github.com/nanoporetech/pomoxi...") |
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|pomoxis}} | |{{#vardefine:app|pomoxis}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 18:48, 21 August 2022
Description
Pomoxis started life as a set of services to perform analysis of squiggles as they are produced in real-time. This functionality still exists although has been complemented with a number of offline analyses for generating and analysing draft assemblies. Many of these tools are used by the research data analysis group at Oxford Nanopore Technologies.
Environment Modules
Run module spider pomoxis to find out what environment modules are available for this application.
System Variables
- HPC_POMOXIS_DIR - installation directory