Difference between revisions of "Pandaseq"

From UFRC
Jump to navigation Jump to search
m (Text replacement - "#uppercase" to "uc")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Bioinformatics]][[Category:Biology]]
+
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|pandaseq}}
 
|{{#vardefine:app|pandaseq}}
Line 21: Line 21:
  
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
===Serial===
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
Line 76: Line 66:
 
<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
__NOTOC____NOEDITSECTION__
 
__NOTOC____NOEDITSECTION__
=Validation=
 
* Validated 4/5/2018
 

Latest revision as of 18:08, 19 August 2022

Description

pandaseq website  

PANDASEQ is a PAired-eND Assembler for DNA sequences.

Environment Modules

Run module spider pandaseq to find out what environment modules are available for this application.

System Variables

  • HPC_PANDASEQ_DIR - installation directory