Difference between revisions of "MIRA"

Latest revision as of 20:42, 18 August 2022

Description

MIRA - Sequence assembler for whole genome shotgun and EST sequencing data. Can use Sanger, 454, Solexa (Illumina) and IonTorrent data. PacBio: CCS and ecCLR data usable, CLR not yet. Please visit the app website for more details.

Environment Modules

Run module spider mira to find out what environment modules are available for this application.

System Variables

HPC_MIRA_DIR - installation directory
HPC_MIRA_BIN - executable directory
HPC_MIRA_DOC - documentation directory

Documentation

The main documentation source for MIRA is the Definitive guide to MIRA.

@@ Line 1: / Line 1: @@
 __NOTOC__
 __NOEDITSECTION__
-[[Category:Software]][[Category:Bioinformatics]]
+[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]]
 {|<!--Main settings - REQUIRED-->
 |{{#vardefine:app|mira}}
@@ Line 20: / Line 20: @@
 MIRA - Sequence assembler for whole genome shotgun and EST sequencing data. Can use Sanger, 454, Solexa (Illumina) and IonTorrent data. PacBio: CCS and ecCLR data usable, CLR not yet. Please visit [http://sourceforge.net/apps/mediawiki/mira-assembler/ the app website] for more details.
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
-[[Modules|modules documentation]]
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-===Serial===
-*{{#var:app}}
 ==System Variables==
 * HPC_{{uc:{{#var:app}}}}_DIR - installation directory
@@ Line 46: / Line 44: @@
 WRITE CITATION HERE
 |}}
-=Validation=
-* Validated 4/5/2018