Difference between revisions of "LFMM"
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| − | [[Category:Software]][[Category:Biology]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |
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|{{#vardefine:app|lfmm}} | |{{#vardefine:app|lfmm}} | ||
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 19:50, 15 August 2022
Description
The LFMM computer program includes an integrated framework based on population genetics, ecological modeling and statistical techniques for screening genomes for signatures of local adaptation.
It implements fast algorithms using latent factor mixed models based on a variant of Bayesian principal component analysis in which residual population structure is introduced via unobserved factors.
Environment Modules
Run module spider lfmm to find out what environment modules are available for this application.
System Variables
- HPC_LFMM_DIR - installation directory
- HPC_LFMM_BIN - executalbe directory
- HPC_LFMM_EXE - example directory
Citation
If you publish research that uses lfmm you have to cite it as follows: