Difference between revisions of "Ipyrad"

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(Created page with "Category:SoftwareCategory:BiologyCategory:BioinformaticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ipyrad}} |{{#vardefine:url|https://gith...")
 
 
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[[Category:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:NGS]]
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[[Category:Software]][[Category:Phylogenetics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|ipyrad}}
 
|{{#vardefine:app|ipyrad}}
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<!--Modules-->
 
<!--Modules-->
 
==Required Modules==
 
==Required Modules==
 
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* gcc
===Serial===
 
* gcc/5.2.0
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
 
* openmpi
 
* openmpi
 
* {{#var:app}}
 
* {{#var:app}}
-->
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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 19:00, 15 August 2022

Description

ipyrad website  

ipyrad, an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies.

Required Modules

  • gcc
  • openmpi
  • ipyrad

System Variables

  • HPC_IPYRAD_DIR - installation directory