Difference between revisions of "EGene-MVN"
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Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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| − | [[Category:Software]][[Category:Biology]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|egene-mvn}} | |{{#vardefine:app|egene-mvn}} | ||
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<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 14:57, 15 August 2022
Description
Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combine results from multiple tissues. As the above picture shows, studies may not detect eQTLs in any of 4 tissues (cortex, heart, liver, spleen). However, by combining results of 4 tissues, we may detect eQTLs. Hence, Meta-Tissue is a powerful approach to detect eQTLs shared across multiple tissues.
Environment Modules
Run module spider egene-mvn to find out what environment modules are available for this application.
System Variables
- HPC_EGENE-MVN_DIR - installation directory
Citation
If you publish research that uses egene-mvn you have to cite it as follows: