EGene-MVN: Difference between revisions
Jump to navigation
Jump to search
Created page with "Category:SoftwareCategory:BiologyCategory:Genetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|egene-mvn}} |{{#vardefine:url|http://genetics.cs.ucla.edu/ege..." |
No edit summary |
||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
[[Category:Software]][[Category:Biology]][[Category: | [[Category:Software]][[Category:Biology]][[Category:Genomics]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|egene-mvn}} | |{{#vardefine:app|egene-mvn}} | ||
| Line 21: | Line 21: | ||
<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:57, 15 August 2022
Description
Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combine results from multiple tissues. As the above picture shows, studies may not detect eQTLs in any of 4 tissues (cortex, heart, liver, spleen). However, by combining results of 4 tissues, we may detect eQTLs. Hence, Meta-Tissue is a powerful approach to detect eQTLs shared across multiple tissues.
Environment Modules
Run module spider egene-mvn to find out what environment modules are available for this application.
System Variables
- HPC_EGENE-MVN_DIR - installation directory
Citation
If you publish research that uses egene-mvn you have to cite it as follows: