Difference between revisions of "CNVkit"
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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|cnvkit}} |{{#vardefine:url|https://github.com/etal/cnvkit}} <!--CONFIGURATION: OPTIONAL (|1}} means it...") |
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| − | [[Category:Software]] | + | [[Category:Software]][[Category:Phylogenetics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|cnvkit}} | |{{#vardefine:app|cnvkit}} | ||
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<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 13:50, 15 August 2022
Description
A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing.
Environment Modules
Run module spider cnvkit to find out what environment modules are available for this application.
System Variables
- HPC_CNVKIT_DIR - installation directory
- HPC_CNVKIT_BIN - executable directory