CLIPper: Difference between revisions

Latest revision as of 13:44, 15 August 2022

CLIPper - CLIP peak enrichment recognition

A tool to detect CLIP-seq peaks.

Run module spider clipper to find out what environment modules are available for this application.

If you publish research that uses clipper you have to cite it as follows:

@@ Line 1: / Line 1: @@
-[[Category:Software]][[Category:Biology]][[Category:Sequencing]]
+[[Category:Software]][[Category:Phylogenetics]]
 {|<!--CONFIGURATION: REQUIRED-->
 |{{#vardefine:app|clipper}}
@@ Line 23: / Line 23: @@
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
+==System Variables==
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
+* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
-===Serial===
-* {{#var:app}}
-<!--
-===Parallel (OpenMP)===
-* intel
-* {{#var:app}}
-===Parallel (MPI)===
-* intel
-* openmpi
-* {{#var:app}}
--->
-==System Variables==
-* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
 <!--Configuration-->
 {{#if: {{#var: conf}}|==Configuration==
@@ Line 71: / Line 62: @@
 If you publish research that uses {{#var:app}} you have to cite it as follows:
-[Lovci et. al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nat Struct Mol Biol. 2013 Dec;20(12):1434-42. doi: 10.1038/nsmb.2699. Epub 2013 Nov 10.]
+[http://www.ncbi.nlm.nih.gov/pubmed/24213538 Lovci et. al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nat Struct Mol Biol. 2013 Dec;20(12):1434-42. doi: 10.1038/nsmb.2699. Epub 2013 Nov 10.]
 |}}