Difference between revisions of "CAP3"
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__NOTOC__ | __NOTOC__ | ||
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Assembly]] |
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In addition, pcap binaries are also provided. | In addition, pcap binaries are also provided. | ||
| − | <!-- --> | + | <!--Modules--> |
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
* HPC_CAP3_BIN - location of the CAP3 executables directory | * HPC_CAP3_BIN - location of the CAP3 executables directory | ||
* HPC_CAP3_DOC - location of the CAP3 docs directory | * HPC_CAP3_DOC - location of the CAP3 docs directory | ||
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WRITE CITATION HERE | WRITE CITATION HERE | ||
|}} | |}} | ||
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Latest revision as of 13:19, 15 August 2022
Description
CAP3 is a sequence assembly program.
Intel processor optimized versions of cap3 and formcon are installed at HPC.
Opteron optimized versions of these binaries are named cap3-opteron and formcon-opteron.
In addition, pcap binaries are also provided.
Environment Modules
Run module spider cap3 to find out what environment modules are available for this application.
System Variables
- HPC_CAP3_DIR - installation directory
- HPC_CAP3_BIN - location of the CAP3 executables directory
- HPC_CAP3_DOC - location of the CAP3 docs directory
- HPC_CAP3_EXAMPLE - location of the CAP3 examples directory