Difference between revisions of "BRATNextGen"
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| − | [[Category:Software]] | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|BRATNextGen}} | |{{#vardefine:app|BRATNextGen}} | ||
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 13:10, 15 August 2022
Description
BratNextGen is a software tool designed for the detection of recombination events within large bacterial data sets. BratNextGen can be used for analysing aligned whole genome data sets. The output of BratNextGen consists of detected recombinogenic segments.
Environment Modules
Run module spider BRATNextGen to find out what environment modules are available for this application.
System Variables
- HPC_BRATNEXTGEN_DIR - installation directory