Difference between revisions of "Subread"
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|{{#vardefine:app|subread}} | |{{#vardefine:app|subread}} | ||
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 12:57, 15 August 2022
Description
The Subread package: a tool kit for processing next-gen sequencing data
Environment Modules
Run module spider subread to find out what environment modules are available for this application.
System Variables
- HPC_SUBREAD_DIR - installation directory
Citation
If you publish research that uses subread you have to cite it as follows:
If you use the Subread or Subjunc aligners, please cite: Liao Y, Smyth GK and Shi W (2013). The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. Nucleic Acids Research, 41(10):e108
If you use the featureCounts program, please cite: Liao Y, Smyth GK and Shi W (2014). featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics, 30(7):923-30