SNAPE-pooled: Difference between revisions
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[[Category:Software]][[Category:Biology]][[Category: | [[Category:Software]][[Category:Biology]][[Category:Variant Calling]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|snape-pooled}} | |{{#vardefine:app|snape-pooled}} | ||
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== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
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Latest revision as of 12:56, 15 August 2022
Description
SNAPE-pooled computes the probability distribution for the frequency of the minor allele in a certain population, at a certain position in the genome. If this probability is high enough, then you have a segregating position, a.k.a. SNP.
Environment Modules
Run module spider snape-pooled to find out what environment modules are available for this application.
System Variables
- HPC_SNAPE-POOLED_DIR - installation directory