Difference between revisions of "Tcoffee"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Bioinformatics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|tcoffee}} |{{#vardefine:url|http://www.tcoffee.org/Projects/tcoffee/}} <!--...") |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|tcoffee}} | |{{#vardefine:app|tcoffee}} | ||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 20:46, 12 August 2022
Description
T-Coffee is a multiple sequence alignment package. You can use T-Coffee to align sequences or to combine the output of your favorite alignment methods (Clustal, Mafft, Probcons, Muscle...) into one unique alignment (M-Coffee).
Environment Modules
Run module spider tcoffee to find out what environment modules are available for this application.
System Variables
- HPC_TCOFFEE_DIR - installation directory
- HPC_TCOFFEE_BIN - executable directory
Citation
If you publish research that uses tcoffee you have to cite it as follows:
T-Coffee: A novel method for multiple sequence alignments. Notredame,Higgins,Heringa,JMB,302(205-217), 2000