Difference between revisions of "Quantas"

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[[Category:Software]][[Category:Bioinformatics]][[Category:Biology]][[Category:NGS]]
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[[Category:Software]][[Category:Biology]][[Category:NGS]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|Qauntas}}
 
|{{#vardefine:app|Qauntas}}
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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 20:29, 12 August 2022

Description

Qauntas website  

Quantas: A pipeline to analyze alternative splicing using RNA-Seq

Required Modules

Serial

  • Qauntas

Parallel (OpenMP)

  • intel
  • Qauntas

Parallel (MPI)

  • intel
  • openmpi
  • Qauntas

System Variables

  • HPC_QAUNTAS_DIR - installation directory




Citation

If you publish research that uses Qauntas you have to cite it as follows:

http://zhanglab.c2b2.columbia.edu/index.php/Publications


Validation

  • Validate 4/5/2018