Difference between revisions of "PeakSplitter"

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m (Text replace - "Usage policy" to "Usage Policy")
 
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__NOTOC__
 
__NOTOC__
 
__NOEDITSECTION__
 
__NOEDITSECTION__
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[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
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[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]
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<!-- ########  Template Configuration ######## -->
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{|<!--Main settings - REQUIRED-->
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<!--Edit definitions of the variables used in template calls
 
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Required variables:
 
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app - lowercase name of the application e.g. "amber"
 
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url - url of the software page (project, company product, etc) - e.g. "http://ambermd.org/"
 
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Optional variables:
 
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INTEL - Version of the Intel Compiler e.g. "11.1"
 
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MPI - MPI Implementation and version e.g. "openmpi/1.3.4"
 
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-->
 
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{|
 
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<!--Main settings - REQUIRED-->
 
 
|{{#vardefine:app|peaksplitter}}
 
|{{#vardefine:app|peaksplitter}}
 
|{{#vardefine:url|http://www.ebi.ac.uk/bertone/software.html}}
 
|{{#vardefine:url|http://www.ebi.ac.uk/bertone/software.html}}
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<!--Compiler and MPI settings - OPTIONAL -->
 
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|{{#vardefine:intel|}} <!-- E.g. "11.1" -->
 
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|{{#vardefine:mpi|}} <!-- E.g. "openmpi/1.3.4" -->
 
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<!--Choose sections to enable - OPTIONAL-->
 
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|{{#vardefine:mod|1}} <!--Present instructions for running the software with modules -->
 
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF-->
 
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF-->
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Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks.
 
Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks.
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<!--Modules-->
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==Available Versions==
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==Environment Modules==
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* 1.0
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
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{{#if: {{#var: mod}}|==Execution Environment and Modules==
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==System Variables==
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{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
{{#if: {{#var: exe}}|==How To Run==
 
{{#if: {{#var: exe}}|==How To Run==
 
|}}
 
|}}

Latest revision as of 20:19, 12 August 2022

Description

peaksplitter website  

Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks.

Environment Modules

Run module spider peaksplitter to find out what environment modules are available for this application.

System Variables

  • HPC_PEAKSPLITTER_DIR - installation directory




Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=PeakSplitter&oldid=24943"