Difference between revisions of "NPhase"
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[[Category:Software]] | [[Category:Software]] | ||
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[[Category:Pipeline]] | [[Category:Pipeline]] | ||
[[Category:Phasing]] | [[Category:Phasing]] | ||
Revision as of 20:07, 12 August 2022
Description
nPhase is a ploidy agnostic tool developed in python which predicts the haplotypes of a sample that was sequenced by both long and short reads by aligning them to a reference. It should work with any ploidy
Environment Modules
Run module spider nphase to find out what environment modules are available for this application.
System Variables
- HPC_NPHASE_DIR - installation directory
- HPC_NPHASE_BIN - executable directory