Difference between revisions of "IGTP"
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|{{#vardefine:app|iGTP}} | |{{#vardefine:app|iGTP}} | ||
Latest revision as of 19:06, 12 August 2022
Description
iGTP is a program designed to help biologists infer species phylogenies from gene phylogenies, using the gene tree parsimony (GTP) approach. The program implements efficient heuristics which allows it to handle large-scale species tree inference under the duplication, duplication-loss, and deep coalescence reconciliation costs.
iGTP provides the following features:
* Allowing unrooted input gene trees * Providing three-dimensional tree visualization * Computing reconciliation costs
Environment Modules
Run module spider iGTP to find out what environment modules are available for this application.
System Variables
- HPC_IGTP_DIR - installation directory
- HPC_IGTP_BIN
Citation
If you publish research that uses iGTP you have to cite it as follows: Ruchi Chaudhary, Mukul S. Bansal, André Wehe, David Fernández-Baca, Oliver Eulenstein, "iGTP: A software package for large-scale gene tree parsimony analysis", BMC Bioinformatics 2010, 11:574.