FastStructure: Difference between revisions
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Moskalenko (talk | contribs) Created page with "Category:SoftwareCategory:BioinformaticsCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|faststructure}} |{{#vardefine:url|http://rajanil.githu..." |
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[[Category:Software]][[Category: | [[Category:Software]][[Category:Biology]][[Category:Genomics]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|faststructure}} | |{{#vardefine:app|faststructure}} | ||
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<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 18:54, 12 August 2022
Description
A variational framework for inferring population structure from SNP genotype data.
It is based on a variational Bayesian framework for posterior inference and is written in Python2.x.
Environment Modules
Run module spider faststructure to find out what environment modules are available for this application.
System Variables
- HPC_FASTSTRUCTURE_DIR - installation directory
Citation
If you publish research that uses faststructure you have to cite it as follows:
Anil Raj, Matthew Stephens, and Jonathan K. Pritchard. fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets , (Genetics) June 2014 197:573-589 (Genetics, Biorxiv).