Cutadapt: Difference between revisions
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__NOTOC__ | __NOTOC__ | ||
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[[Category:Software]][[Category: | [[Category:Software]][[Category:Biology]][[Category:NGS]] | ||
{|<!--Main settings - REQUIRED--> | {|<!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|cutadapt}} | |{{#vardefine:app|cutadapt}} | ||
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<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
{{#if: {{#var: exe}}|==How To Run== | {{#if: {{#var: exe}}|==How To Run== | ||
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | ||
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WRITE CITATION HERE | WRITE CITATION HERE | ||
|}} | |}} | ||
Latest revision as of 18:44, 12 August 2022
Description
cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary when the read length of the sequencing machine is longer than the molecule that is sequenced, for example when sequencing microRNAs.
Environment Modules
Run module spider cutadapt to find out what environment modules are available for this application.
System Variables
- HPC_CUTADAPT_DIR - installation directory