Difference between revisions of "BPP"
Jump to navigation
Jump to search
| (2 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|bpp}} | |{{#vardefine:app|bpp}} | ||
| Line 20: | Line 20: | ||
The program BP&P implements the Bayesian methods of Yang (2002), Rannala & Yang (2003), Burgess & Yang (2008), and Yang & Rannala (2010), for estimating population sizes (theta), species divergence times (tau), and for delimiting species using multi-locus sequence data from several closely related species. | The program BP&P implements the Bayesian methods of Yang (2002), Rannala & Yang (2003), Burgess & Yang (2008), and Yang & Rannala (2010), for estimating population sizes (theta), species divergence times (tau), and for delimiting species using multi-locus sequence data from several closely related species. | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | |||
| − | < | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
| Line 68: | Line 58: | ||
<!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | <!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | ||
__NOTOC____NOEDITSECTION__ | __NOTOC____NOEDITSECTION__ | ||
| − | |||
| − | |||
Latest revision as of 18:21, 12 August 2022
Description
The program BP&P implements the Bayesian methods of Yang (2002), Rannala & Yang (2003), Burgess & Yang (2008), and Yang & Rannala (2010), for estimating population sizes (theta), species divergence times (tau), and for delimiting species using multi-locus sequence data from several closely related species.
Environment Modules
Run module spider bpp to find out what environment modules are available for this application.
System Variables
- HPC_BPP_DIR - installation directory
Additional Information
Sample '.ctl' files are in the '$HPC_BPP_CTL' directory. You need to copy one of them to your current working directory and modify it before running bpp.