Difference between revisions of "BEAR"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:Metagenomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|bear}} |{{#vardefine:url|https://github.com/sej917/BEAR}}...") |
|||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category:Biology]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|bear}} | |{{#vardefine:app|bear}} | ||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 18:13, 12 August 2022
Description
BEAR is intended to be an easy-to-use collection of scripts for simulated WGS metagenomic reads with read lengths, quality scores, profiles, and species abundances derived from real user-supplied WGS data. for commercial purposes, please contact us.
Environment Modules
Run module spider bear to find out what environment modules are available for this application.
System Variables
- HPC_BEAR_DIR - installation directory
- HPC_BEAR_BIN - executable directory