Bamstats: Difference between revisions
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Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
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[[Category:Software]] | [[Category:Software]][[Category:Biology]][[Category:NGS]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|bamstats}} | |{{#vardefine:app|bamstats}} | ||
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Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage. | Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage. | ||
<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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<!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | <!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | ||
__NOTOC____NOEDITSECTION__ | __NOTOC____NOEDITSECTION__ | ||
Latest revision as of 18:01, 12 August 2022
Description
Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage.
Environment Modules
Run module spider bamstats to find out what environment modules are available for this application.
System Variables
- HPC_BAMSTATS_DIR - installation directory