AtomEye: Difference between revisions

From UFRC
Jump to navigation Jump to search
No edit summary
No edit summary
 
(2 intermediate revisions by one other user not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Structural Biology]]
[[Category:Software]][[Category:Material Science]]
{|<!--CONFIGURATION: REQUIRED-->
{|<!--CONFIGURATION: REQUIRED-->
|{{#vardefine:app|AtomEye}}
|{{#vardefine:app|AtomEye}}
Line 24: Line 24:
[[Modules|modules documentation]]
[[Modules|modules documentation]]
*intel
*intel
*{{#lowercase:{{#var:app}}}}
*{{lc:{{#var:app}}}}
==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable program directory
* HPC_{{uc:{{#var:app}}}}_BIN - executable program directory
* HPC_{{#uppercase:{{#var:app}}}}_LIB - library directory
* HPC_{{uc:{{#var:app}}}}_LIB - library directory
* HPC_{{#uppercase:{{#var:app}}}}_INC - include directory
* HPC_{{uc:{{#var:app}}}}_INC - include directory


<!--Configuration-->
<!--Configuration-->

Latest revision as of 15:21, 12 August 2022

Description

AtomEye website  

AtomEye is free atomistic visualization software for all major UNIX platforms. It is based on a newly developed graphics core library of higher quality than the X-window standard, with area-weighted anti-aliasing. An order-N neighbourlist algorithm is used to compute the bond connectivity. The functionalities of AtomEye include: parallel and perspective projections with full three-dimensional navigation; customizable bond and coordination number calculation; colour-encoding of arbitrary user-defined quantities; local atomic strain invariant; coloured atom tiling and tracing; up to 16 cutting planes; periodic boundary condition translations; high-quality JPEG, PNG and EPS screenshots; and animation scripting.

Required Modules

modules documentation

  • intel
  • atomeye

System Variables

  • HPC_ATOMEYE_DIR - installation directory
  • HPC_ATOMEYE_BIN - executable program directory
  • HPC_ATOMEYE_LIB - library directory
  • HPC_ATOMEYE_INC - include directory





Citation

If you publish research that uses AtomEye you have to cite it as follows:

J. Li, AtomEye: an efficient atomistic configuration viewer, Modeling Simulation in Material Science Engineering, 11 (2003) 173-177