AtomEye: Difference between revisions

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[[Category:Software]][[Category:Material Science and Engineering]][[Category:Engineering]]
[[Category:Software]][[Category:Material Science]]
{|<!--CONFIGURATION: REQUIRED-->
{|<!--CONFIGURATION: REQUIRED-->
|{{#vardefine:app|AtomEye}}
|{{#vardefine:app|AtomEye}}
|{{#vardefine:url|http://li.mit.edu/Archive/Graphics/A/}}
|{{#vardefine:url|http://li.mit.edu/Archive/Graphics/A/}}
<!--CONFIGURATION: OPTIONAL (1=ON)-->
<!--CONFIGURATION: OPTIONAL (1=ON)-->
|{{#vardefine:exe|1}} <!--RUNNING -->
|{{#vardefine:exe|}} <!--RUNNING -->
|{{#vardefine:conf|}} <!--CONFIGS-->
|{{#vardefine:conf|}} <!--CONFIGS-->
|{{#vardefine:pbs|1}} <!--PBS SCRIPTS-->
|{{#vardefine:pbs|}} <!--PBS SCRIPTS-->
|{{#vardefine:policy|}} <!--POLICY-->
|{{#vardefine:policy|}} <!--POLICY-->
|{{#vardefine:testing|}} <!--TESTING/PROFILING-->
|{{#vardefine:testing|}} <!--TESTING/PROFILING-->
|{{#vardefine:faq|}} <!--FAQ-->
|{{#vardefine:faq|}} <!--FAQ-->
|{{#vardefine:citation|}} <!--CITATION-->
|{{#vardefine:citation|1}} <!--CITATION-->
|{{#vardefine:installation|}} <!--INSTALLATION-->
|{{#vardefine:installation|}} <!--INSTALLATION-->
|}
|}
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[[Modules|modules documentation]]
[[Modules|modules documentation]]
*intel
*intel
*{{#var:app}}
*{{lc:{{#var:app}}}}
==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_BIN - executable program directory
* HPC_{{uc:{{#var:app}}}}_LIB - library directory
* HPC_{{uc:{{#var:app}}}}_INC - include directory


<!--Configuration-->
<!--Configuration-->
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{{#if: {{#var: citation}}|==Citation==
{{#if: {{#var: citation}}|==Citation==
If you publish research that uses {{#var:app}} you have to cite it as follows:
If you publish research that uses {{#var:app}} you have to cite it as follows:
DOUBLE_CLICK_TO_WRITE_CITATION_HERE
 
J. Li, AtomEye: an efficient atomistic configuration viewer, Modeling Simulation in Material Science Engineering, 11 (2003) 173-177
|}}
|}}
<!--Installation-->
<!--Installation-->

Latest revision as of 15:21, 12 August 2022

Description

AtomEye website  

AtomEye is free atomistic visualization software for all major UNIX platforms. It is based on a newly developed graphics core library of higher quality than the X-window standard, with area-weighted anti-aliasing. An order-N neighbourlist algorithm is used to compute the bond connectivity. The functionalities of AtomEye include: parallel and perspective projections with full three-dimensional navigation; customizable bond and coordination number calculation; colour-encoding of arbitrary user-defined quantities; local atomic strain invariant; coloured atom tiling and tracing; up to 16 cutting planes; periodic boundary condition translations; high-quality JPEG, PNG and EPS screenshots; and animation scripting.

Required Modules

modules documentation

  • intel
  • atomeye

System Variables

  • HPC_ATOMEYE_DIR - installation directory
  • HPC_ATOMEYE_BIN - executable program directory
  • HPC_ATOMEYE_LIB - library directory
  • HPC_ATOMEYE_INC - include directory





Citation

If you publish research that uses AtomEye you have to cite it as follows:

J. Li, AtomEye: an efficient atomistic configuration viewer, Modeling Simulation in Material Science Engineering, 11 (2003) 173-177