Difference between revisions of "Assembly-stats"
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| − | [[Category:Software]][[Category:Biology]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|assembly-stats}} | |{{#vardefine:app|assembly-stats}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:56, 12 August 2022
Description
Get assembly statistics from FASTA and FASTQ files.
Detection of FASTA or FASTQ format of each file is automatic from the file contents, so file names and extensions are irrelevant.
The default output format is human readable. You can change the output format and ignore sequences shorter than a given length. Get the full usage by running with no files listed:
Environment Modules
Run module spider assembly-stats to find out what environment modules are available for this application.
System Variables
- HPC_ASSEMBLY-STATS_DIR - installation directory