AMAS: Difference between revisions

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Created page with "Category:SoftwareCategory:BiologyCategory:Sequence Alignment {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|amas}} |{{#vardefine:url|https://github.com/marekbo..."
 
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[[Category:Software]][[Category:Biology]][[Category:Sequence Alignment]]
[[Category:Software]][[Category:Phylogenetics]]
{|<!--CONFIGURATION: REQUIRED-->
{|<!--CONFIGURATION: REQUIRED-->
|{{#vardefine:app|amas}}
|{{#vardefine:app|amas}}
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<!--Modules-->
<!--Modules-->
==Required Modules==
==Environment Modules==
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
* {{#var:app}}
* gcc/5.2.0
<!--
===Parallel (OpenMP)===
* intel
* {{#var:app}}
===Parallel (MPI)===
* intel
* openmpi
* {{#var:app}}
-->
==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
<!--Configuration-->
<!--Configuration-->
{{#if: {{#var: conf}}|==Configuration==
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 12:38, 12 August 2022

Description

amas website  

Alignment manipulation and summary statistics

Environment Modules

Run module spider amas to find out what environment modules are available for this application.

System Variables

  • HPC_AMAS_DIR - installation directory




Citation

If you publish research that uses amas you have to cite it as follows:

Borowiec, M.L. 2016. AMAS: a fast tool for alignment manipulation and computing of summary statistics. PeerJ 4:e1660.