Difference between revisions of "DSSP"
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Molecular Dynamics]] |
{|<!--Main settings - REQUIRED--> | {|<!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|DSSP}} | |{{#vardefine:app|DSSP}} | ||
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
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Latest revision as of 19:51, 13 June 2022
Description
The DSSP program was designed by Wolfgang Kabsch and Chris Sander to standardize secondary structure assignment. DSSP is a database of secondary structure assignments (and much more) for all protein entries in the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP entries from PDB entries. DSSP does not predict secondary structure.
Environment Modules
Run module spider DSSP to find out what environment modules are available for this application.
System Variables
- HPC_DSSP_DIR - installation directory
- HPC_DSSP_BIN - executable directory