Difference between revisions of "ImageJ"

Latest revision as of 20:03, 10 June 2022

ImageJ is a public domain Java image processing program inspired by NIH Image for the Macintosh.

ImageJ can be run via the imagej wrapper script.

Run module spider imagej to find out what environment modules are available for this application.

ImageJ should only be run on the gui.rc.ufl.edu server and only for image viewing or very lightweight and short analyses.

@@ Line 22: / Line 22: @@
 ImageJ can be run via the ''imagej'' wrapper script.
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
-===Serial===
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-* {{#var:app}}
-<!--
-===Parallel (OpenMP)===
-* intel
-* {{#var:app}}
-===Parallel (MPI)===
-* intel
-* openmpi
-* {{#var:app}}
--->
 ==System Variables==
-* HPC_{{#uppercase:{{#var:app}}}}_DIR
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 <!--Configuration-->
 {{#if: {{#var: conf}}|==Configuration==
@@ Line 43: / Line 33: @@
 {{#if: {{#var: exe}}|==Additional Information==
-ImageJ should only be run on the [[GUI_Programs|gui.hpc.ufl.edu]] server and only for image viewing or very lightweight and short analyses.
+ImageJ should only be run on the [[GUI_Programs|gui.rc.ufl.edu]] server and only for image viewing or very lightweight and short analyses.
 |}}
 <!--PBS scripts-->