Difference between revisions of "GeneSeqer"

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==Required Modules==
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==Environment Modules==
===Serial===
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
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===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
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==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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=Validation=
 
* Validated 4/5/2018
 

Revision as of 20:02, 10 June 2022

Description

geneseqer website  

GeneSeqer is a spliced alignment tool.

Environment Modules

Run module spider geneseqer to find out what environment modules are available for this application.

System Variables

  • HPC_GENESEQER_DIR - installation directory




Citation

If you publish research that uses geneseqer you have to cite it as follows:

Brendel, V., Xing, L. & Zhu, W. (2004) Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus. Bioinformatics 20, 1157-1169.