Difference between revisions of "DSK"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|dsk}} |{{#vardefine:url|http://minia.genouest.org/dsk/}} <!--CONFI...") |
|||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 21: | Line 21: | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | |||
| − | |||
| − | < | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_EXE - example directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 17:17, 10 June 2022
Description
DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory required for a mammalian dataset) with reasonably low temporary disk usage, and supports any value of k. DSK can count k-mers of large Illumina datasets on laptops and desktop computers.
Environment Modules
Run module spider dsk to find out what environment modules are available for this application.
System Variables
- HPC_DSK_DIR - installation directory
- HPC_DSK_DOC - documentation directory
- HPC_DSK_EXE - example directory
Citation
If you publish research that uses dsk you have to cite it as follows: