DSK: Difference between revisions
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Created page with "Category:SoftwareCategory:BiologyCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|dsk}} |{{#vardefine:url|http://minia.genouest.org/dsk/}} <!--CONFI..." |
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<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{uc:{{#var:app}}}}_DOC - documentation directory | |||
* HPC_{{uc:{{#var:app}}}}_EXE - example directory | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 17:17, 10 June 2022
Description
DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory required for a mammalian dataset) with reasonably low temporary disk usage, and supports any value of k. DSK can count k-mers of large Illumina datasets on laptops and desktop computers.
Environment Modules
Run module spider dsk to find out what environment modules are available for this application.
System Variables
- HPC_DSK_DIR - installation directory
- HPC_DSK_DOC - documentation directory
- HPC_DSK_EXE - example directory
Citation
If you publish research that uses dsk you have to cite it as follows: