Difference between revisions of "Roary"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 17:13, 10 June 2022
Description
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seemann, 2014)) and calculates the pan genome. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes.
Environment Modules
Run module spider roary to find out what environment modules are available for this application.
System Variables
- HPC_ROARY_DIR - installation directory
Citation
If you publish research that uses roary you have to cite it as follows: