Difference between revisions of "SNP-Pipeline"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|snp-pipeline}} |{{#vardefine:url|https://github.com/CFSA...") |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 21: | Line 21: | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | |||
| − | |||
| − | < | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 17:00, 10 June 2022
Description
SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.
Environment Modules
Run module spider snp-pipeline to find out what environment modules are available for this application.
System Variables
- HPC_SNP-PIPELINE_DIR - installation directory
- HPC_SNP-PIPELINE_BIN - executable directory
Citation
If you publish research that uses snp-pipeline you have to cite it as follows: