Difference between revisions of "Razers3"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 16:50, 10 June 2022
Description
RazerS 3 is a tool for mapping millions of short genomic reads onto a reference genome. It was designed with focus on mapping next-generation sequencing reads onto whole DNA genomes. RazerS 3 searches for matches of reads with a percent identity above a given threshold (-i X), whereby it detects alignments with mismatches as well as gaps.
Environment Modules
Run module spider razers3 to find out what environment modules are available for this application.
System Variables
- HPC_RAZERS3_DIR - installation directory
- HPC_RAZERS3_BIN - executable directory
- HPC_RAZERS3_DOC - documentation directory
- HPC_RAZERS3_EXE - example directory