Difference between revisions of "Tapir"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|tapir}} |{{#vardefine:url|https://github.com/faircloth-l...") |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 21: | Line 21: | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | |||
| − | |||
| − | |||
| − | < | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 16:40, 10 June 2022
Description
tapir contains programs to estimate and plot phylogenetic informativeness for large datasets.
Environment Modules
Run module spider tapir to find out what environment modules are available for this application.
System Variables
- HPC_TAPIR_DIR - installation directory
Citation
If you publish research that uses tapir you have to cite it as follows:
Faircloth BC, Chang J, Alfaro ME: TAPIR enables high throughput analysis of phylogenetic informativeness. arXiv:1202.1215
Townsend JP: Profiling phylogenetic informativeness. Systematic Biol. 2007, 56:222-231.
Pond SLK, Frost SDW, Muse SV: HyPhy: hypothesis testing using phylogenies. Bioinformatics 2005, 21:676-679.