Difference between revisions of "SICER"

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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 16:35, 10 June 2022

Description

sicer website  

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data.

Environment Modules

Run module spider sicer to find out what environment modules are available for this application.

System Variables

  • HPC_SICER_DIR - installation directory




Citation

If you publish research that uses sicer you have to cite it as follows:

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data” Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, and Weiqun Peng, Bioinformatics 25, 1952 - 1958 (2009)