Difference between revisions of "SICER"
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(Created page with "Category:SoftwareCategory:BiologyCategory:ChIP-Seq {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|sicer}} |{{#vardefine:url|http://home.gwu.edu/~wpeng/Software...") |
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732366/ A clustering approach for identification of enriched domains from histone modification | + | [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732366/ A clustering approach for identification of enriched domains from histone modification ChIP-Seq data” Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, and Weiqun Peng, Bioinformatics 25, 1952 - 1958 (2009)] |
| − | ChIP-Seq data” Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, and | ||
| − | Weiqun Peng, Bioinformatics 25, 1952 - 1958 (2009)] | ||
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Latest revision as of 16:35, 10 June 2022
Description
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data.
Environment Modules
Run module spider sicer to find out what environment modules are available for this application.
System Variables
- HPC_SICER_DIR - installation directory
Citation
If you publish research that uses sicer you have to cite it as follows: